Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trmKtRNA (adenine(22)-N(1))-methyltransferase. (230 aa)    
Predicted Functional Partners:
AQR99296.1
Putative GTP cyclohydrolase 1 type 2.
  
  
 0.917
AQR99514.1
Hypothetical protein; Belongs to the UPF0297 family.
  
     0.762
AQR99582.1
Putative DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.703
spoVB_3
Stage V sporulation protein B.
  
     0.663
AQS02634.1
Hypothetical protein.
  
     0.659
spoVB_1
Stage V sporulation protein B.
  
     0.648
whiA
Putative sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
  
     0.635
YloA
Fibronectin-binding protein A N-terminus (FbpA).
 
     0.618
dapH_2
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
  
    0.567
addA
ATP-dependent helicase/nuclease subunit A; ATP-dependent DNA helicase.
 
     0.556
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.