STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yunBSporulation protein YunB. (236 aa)    
Predicted Functional Partners:
ytfJ
Putative spore protein YtfJ.
  
   
 0.742
YqfD
Putative stage IV sporulation protein YqfD.
  
   
 0.703
pbpF_1
Penicillin-binding protein 1F.
       0.702
SpoIIGA
Sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.690
AQR99530.1
PRC-barrel domain protein.
  
   
 0.686
spoIIE
Stage II sporulation protein E.
  
     0.681
SpoIIR
Stage II sporulation protein SpoIIR.
  
     0.666
CotJB
CotJB protein.
  
    0.662
AQS02444.1
Hypothetical protein.
  
     0.654
AQS00728.1
Small, acid-soluble spore protein beta.
  
     0.641
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.