STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilTTwitching mobility protein. (345 aa)    
Predicted Functional Partners:
comC
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
   
 0.870
epsF
Type II secretion system protein F.
 
  
 0.867
gspF
Putative type II secretion system protein F.
 
  
 0.866
PilM
Competence protein A.
 
   
 0.832
barA_1
Signal transduction histidine-protein kinase BarA.
     
 0.753
fimA
Fimbrial protein precursor.
 
   
 0.632
cinA_2
Putative competence-damage inducible protein; Belongs to the CinA family.
 
   
 0.543
pheA
P-protein.
     
 0.512
gspE
Putative type II secretion system protein E.
 
  
0.510
AQS00084.1
Putative histidine kinase sensor domain protein.
     
 0.509
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.