STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PilMCompetence protein A. (400 aa)    
Predicted Functional Partners:
AQR99340.1
Fimbrial assembly protein PilN.
 
 
 0.992
PilO
Hypothetical protein.
 
 
 0.973
epsF
Type II secretion system protein F.
 
 
 
 0.954
epsE
Type II secretion system protein E.
 
 
 0.930
comC
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
  
 0.905
gspF
Putative type II secretion system protein F.
 
 
 
 0.898
gspE
Putative type II secretion system protein E.
 
 
 0.884
pilT
Twitching mobility protein.
 
   
 0.832
fimA
Fimbrial protein precursor.
 
   
 0.827
AQR99342.1
Hypothetical protein.
       0.737
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.