STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR99340.1Fimbrial assembly protein PilN. (185 aa)    
Predicted Functional Partners:
PilO
Hypothetical protein.
 
 
 0.997
PilM
Competence protein A.
 
 
 0.992
AQR99345.1
Von Willebrand factor type A domain protein.
 
     0.861
epsF
Type II secretion system protein F.
 
 
 
 0.819
AQR99342.1
Hypothetical protein.
       0.776
epsE
Type II secretion system protein E.
  
 
 0.775
AQR99343.1
Hypothetical protein.
       0.722
gspE
Putative type II secretion system protein E.
  
 
 0.716
gspF
Putative type II secretion system protein F.
   
 
 0.691
AQS02325.1
Hypothetical protein.
  
     0.684
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.