STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssuC_1Putative aliphatic sulfonates transport permease protein SsuC. (285 aa)    
Predicted Functional Partners:
tauB
Taurine import ATP-binding protein TauB.
 
  
 0.984
AQR99385.1
NMT1/THI5 like protein.
 
  
 0.956
ssuB
Aliphatic sulfonates import ATP-binding protein SsuB.
 
  
 0.900
AQS00630.1
Putative thiamine biosynthesis protein.
  
 0.823
fbpC
Fe(3+) ions import ATP-binding protein FbpC.
 
  
 0.774
lrgA
Antiholin-like protein LrgA.
       0.629
yohK
Inner membrane protein YohK.
       0.629
AQR99467.1
NMT1/THI5 like protein.
  
  
 0.580
AQS00632.1
Hypothetical protein.
 
    0.489
gpr_1
Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.459
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.