STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdaA_1peptidoglycan-N-acetylmuramic acid deacetylase PdaA precursor. (295 aa)    
Predicted Functional Partners:
ychF
Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.668
AQR99423.1
Hypothetical protein.
       0.513
amiC_1
N-acetylmuramoyl-L-alanine amidase AmiC precursor.
  
   
 0.473
icaA
poly-beta-1,6-N-acetyl-D-glucosamine synthase.
  
  
 0.421
hyaD
Hyaluronan synthase.
  
  
 0.421
AQS02141.1
Beta-monoglucosyldiacylglycerol synthase.
  
  
 0.421
epsJ_2
Putative glycosyltransferase EpsJ.
  
  
 0.421
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.411
AQS00036.1
Metallo-beta-lactamase superfamily protein.
   
    0.404
AQS02313.1
Glycosyl transferases group 1.
  
  
 0.403
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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