STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapH_12,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. (166 aa)    
Predicted Functional Partners:
mtcA1
Beta-carbonic anhydrase 1.
    
 
 0.795
fosB
Metallothiol transferase FosB.
 
    0.732
AQR99464.1
Hypothetical protein; Conserved virulence factor B; Belongs to the CvfB family.
       0.683
AQR99462.1
Hypothetical protein.
       0.618
trxB_1
Thioredoxin reductase.
  
   0.553
trxA
Thioredoxin; Belongs to the thioredoxin family.
    
   0.525
AQR99471.1
Thioredoxin C-2; Belongs to the thioredoxin family.
    
   0.525
PedC
Hypothetical protein.
    
   0.525
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
  
  
 0.491
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
    0.475
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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