fbpC protein (Clostridium saccharobutylicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

fbpC

Fe(3+) ions import ATP-binding protein FbpC. (222 aa)

Predicted Functional Partners:

ssuC_2

0.963

AQR99467.1

0.943

ssuC_1

0.774

ssuC_3

0.700

AQS00630.1

0.569

AQR99385.1

0.563

trxB_1

0.488

ftsH_2

0.461

rpsK

0.460

AQR99466.1

0.442

Your Current Organism:

Clostridium saccharobutylicum

NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQR99385.1	fbpC	CSACC_11940	CSACC_12780	NMT1/THI5 like protein.	Fe(3+) ions import ATP-binding protein FbpC.	0.563
AQR99385.1	ssuC_1	CSACC_11940	CSACC_11960	NMT1/THI5 like protein.	Putative aliphatic sulfonates transport permease protein SsuC.	0.956
AQR99385.1	ssuC_2	CSACC_11940	CSACC_12770	NMT1/THI5 like protein.	Putative aliphatic sulfonates transport permease protein SsuC.	0.540
AQR99385.1	ssuC_3	CSACC_11940	CSACC_24550	NMT1/THI5 like protein.	Putative aliphatic sulfonates transport permease protein SsuC.	0.743
AQR99466.1	AQR99467.1	CSACC_12750	CSACC_12760	Hypothetical protein.	NMT1/THI5 like protein.	0.554
AQR99466.1	fbpC	CSACC_12750	CSACC_12780	Hypothetical protein.	Fe(3+) ions import ATP-binding protein FbpC.	0.442
AQR99466.1	ssuC_2	CSACC_12750	CSACC_12770	Hypothetical protein.	Putative aliphatic sulfonates transport permease protein SsuC.	0.495
AQR99467.1	AQR99466.1	CSACC_12760	CSACC_12750	NMT1/THI5 like protein.	Hypothetical protein.	0.554
AQR99467.1	fbpC	CSACC_12760	CSACC_12780	NMT1/THI5 like protein.	Fe(3+) ions import ATP-binding protein FbpC.	0.943
AQR99467.1	ssuC_1	CSACC_12760	CSACC_11960	NMT1/THI5 like protein.	Putative aliphatic sulfonates transport permease protein SsuC.	0.580
AQR99467.1	ssuC_2	CSACC_12760	CSACC_12770	NMT1/THI5 like protein.	Putative aliphatic sulfonates transport permease protein SsuC.	0.981
AQR99467.1	ssuC_3	CSACC_12760	CSACC_24550	NMT1/THI5 like protein.	Putative aliphatic sulfonates transport permease protein SsuC.	0.545
AQS00630.1	fbpC	CSACC_24540	CSACC_12780	Putative thiamine biosynthesis protein.	Fe(3+) ions import ATP-binding protein FbpC.	0.569
AQS00630.1	ssuC_1	CSACC_24540	CSACC_11960	Putative thiamine biosynthesis protein.	Putative aliphatic sulfonates transport permease protein SsuC.	0.823
AQS00630.1	ssuC_2	CSACC_24540	CSACC_12770	Putative thiamine biosynthesis protein.	Putative aliphatic sulfonates transport permease protein SsuC.	0.621
AQS00630.1	ssuC_3	CSACC_24540	CSACC_24550	Putative thiamine biosynthesis protein.	Putative aliphatic sulfonates transport permease protein SsuC.	0.969
fbpC	AQR99385.1	CSACC_12780	CSACC_11940	Fe(3+) ions import ATP-binding protein FbpC.	NMT1/THI5 like protein.	0.563
fbpC	AQR99466.1	CSACC_12780	CSACC_12750	Fe(3+) ions import ATP-binding protein FbpC.	Hypothetical protein.	0.442
fbpC	AQR99467.1	CSACC_12780	CSACC_12760	Fe(3+) ions import ATP-binding protein FbpC.	NMT1/THI5 like protein.	0.943
fbpC	AQS00630.1	CSACC_12780	CSACC_24540	Fe(3+) ions import ATP-binding protein FbpC.	Putative thiamine biosynthesis protein.	0.569