artQ_1 protein (Clostridium saccharobutylicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

artQ_1

Arginine transport system permease protein ArtQ. (213 aa)

Predicted Functional Partners:

fliY

0.999

glnQ_3

0.998

glnH_2

0.984

artP

0.984

glnH_1

0.983

glnQ_2

0.952

artM_2

0.952

glnQ_1

0.951

artM_1

0.951

artJ_2

0.853

Your Current Organism:

Clostridium saccharobutylicum

NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
artJ_2	artM_1	CSACC_16640	CSACC_22030	ABC transporter arginine-binding protein 1 precursor.	Arginine transport ATP-binding protein ArtM.	0.847
artJ_2	artM_2	CSACC_16640	CSACC_42360	ABC transporter arginine-binding protein 1 precursor.	Arginine transport ATP-binding protein ArtM.	0.851
artJ_2	artQ_1	CSACC_16640	CSACC_12880	ABC transporter arginine-binding protein 1 precursor.	Arginine transport system permease protein ArtQ.	0.853
artJ_2	glnH_1	CSACC_16640	CSACC_07390	ABC transporter arginine-binding protein 1 precursor.	Glutamine-binding periplasmic protein precursor.	0.562
artJ_2	glnH_2	CSACC_16640	CSACC_07400	ABC transporter arginine-binding protein 1 precursor.	Glutamine-binding periplasmic protein precursor.	0.562
artJ_2	glnQ_1	CSACC_16640	CSACC_07370	ABC transporter arginine-binding protein 1 precursor.	Glutamine transport ATP-binding protein GlnQ.	0.853
artJ_2	glnQ_2	CSACC_16640	CSACC_08490	ABC transporter arginine-binding protein 1 precursor.	Glutamine transport ATP-binding protein GlnQ.	0.853
artJ_2	glnQ_3	CSACC_16640	CSACC_12890	ABC transporter arginine-binding protein 1 precursor.	Glutamine transport ATP-binding protein GlnQ.	0.818
artM_1	artJ_2	CSACC_22030	CSACC_16640	Arginine transport ATP-binding protein ArtM.	ABC transporter arginine-binding protein 1 precursor.	0.847
artM_1	artP	CSACC_22030	CSACC_42380	Arginine transport ATP-binding protein ArtM.	Arginine-binding extracellular protein ArtP precursor; Belongs to the bacterial solute-binding protein 3 family.	0.852
artM_1	artQ_1	CSACC_22030	CSACC_12880	Arginine transport ATP-binding protein ArtM.	Arginine transport system permease protein ArtQ.	0.951
artM_1	fliY	CSACC_22030	CSACC_12870	Arginine transport ATP-binding protein ArtM.	Cystine-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	0.854
artM_1	glnH_1	CSACC_22030	CSACC_07390	Arginine transport ATP-binding protein ArtM.	Glutamine-binding periplasmic protein precursor.	0.962
artM_1	glnH_2	CSACC_22030	CSACC_07400	Arginine transport ATP-binding protein ArtM.	Glutamine-binding periplasmic protein precursor.	0.963
artM_2	artJ_2	CSACC_42360	CSACC_16640	Arginine transport ATP-binding protein ArtM.	ABC transporter arginine-binding protein 1 precursor.	0.851
artM_2	artP	CSACC_42360	CSACC_42380	Arginine transport ATP-binding protein ArtM.	Arginine-binding extracellular protein ArtP precursor; Belongs to the bacterial solute-binding protein 3 family.	0.982
artM_2	artQ_1	CSACC_42360	CSACC_12880	Arginine transport ATP-binding protein ArtM.	Arginine transport system permease protein ArtQ.	0.952
artM_2	fliY	CSACC_42360	CSACC_12870	Arginine transport ATP-binding protein ArtM.	Cystine-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	0.861
artM_2	glnH_1	CSACC_42360	CSACC_07390	Arginine transport ATP-binding protein ArtM.	Glutamine-binding periplasmic protein precursor.	0.966
artM_2	glnH_2	CSACC_42360	CSACC_07400	Arginine transport ATP-binding protein ArtM.	Glutamine-binding periplasmic protein precursor.	0.967