STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YrrMPutative O-methyltransferase. (214 aa)    
Predicted Functional Partners:
ydcP_2
Putative protease YdcP precursor.
  
  
 0.902
mltG
Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
  
    0.826
typA
GTP-binding protein TypA/BipA.
  
  
 0.716
mbtB_2
Phenyloxazoline synthase MbtB.
 
 
 
 0.688
spoVD_1
Stage V sporulation protein D.
       0.639
yhbU
Putative protease YhbU precursor.
  
  
 0.588
ydcP_3
Putative protease YdcP precursor.
  
  
 0.588
sigK_1
RNA polymerase sigma-28 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.577
ydcP_1
Putative protease YdcP precursor.
  
  
 0.576
udk
Uridine kinase.
  
    0.568
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (28%) [HD]