STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVD_1Stage V sporulation protein D. (519 aa)    
Predicted Functional Partners:
ftsW_2
Lipid II flippase FtsW; Belongs to the SEDS family.
 0.923
mrdB_1
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 
 0.914
ftsW_1
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 0.902
mrdB_2
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 
 0.879
ftsA_1
Cell division protein FtsA.
 
 
 0.803
SpoIIP
Stage II sporulation protein SpoIIP.
  
  
 0.792
sigK_1
RNA polymerase sigma-28 factor precursor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.786
divIB
Cell division protein DivIB; Essential cell division protein.
 
 
 0.743
pbpF_2
Penicillin-binding protein 1F.
 
 
 0.740
ftsL_2
Cell division protein FtsL.
  
 
 0.721
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.