STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR99563.1Hypothetical protein. (116 aa)    
Predicted Functional Partners:
YloV
DAK2 domain protein.
 
  
 0.987
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.669
slt_2
Soluble lytic murein transglycosylase precursor.
   
    0.655
AQR99685.1
DegV domain-containing protein.
 
    0.653
AQS02190.1
DegV domain-containing protein.
 
    0.643
AQS00411.1
DegV domain-containing protein.
 
    0.640
AQR98342.1
DegV domain-containing protein.
 
    0.635
AQR99514.1
Hypothetical protein; Belongs to the UPF0297 family.
  
  
 0.618
AQR99568.1
Hypothetical protein.
 
     0.611
AQS01999.1
Fatty acid-binding protein.
 
    0.609
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.