STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YloVDAK2 domain protein. (548 aa)    
Predicted Functional Partners:
AQR99563.1
Hypothetical protein.
 
  
 0.987
AQS02190.1
DegV domain-containing protein.
 
 0.983
AQS00411.1
DegV domain-containing protein.
 
 0.978
AQS01999.1
Fatty acid-binding protein.
 
 0.977
AQR99685.1
DegV domain-containing protein.
 
 0.972
AQR98342.1
DegV domain-containing protein.
 
 0.971
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
  
    0.733
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.668
AQR99568.1
Hypothetical protein.
 
     0.622
rsmD
Ribosomal RNA small subunit methyltransferase D.
       0.563
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.