Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ylbJSporulation integral membrane protein YlbJ. (390 aa)    
Predicted Functional Partners:
YqfD
Putative stage IV sporulation protein YqfD.
 
   
 0.839
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.835
spmB
Spore maturation protein B.
 
  
 0.816
spoIIID
Stage III sporulation protein D.
  
  
 0.798
AQS00868.1
Stage III sporulation protein AC/AD protein family protein.
  
   
 0.789
SpoIIR
Stage II sporulation protein SpoIIR.
  
   
 0.788
SpoIIIAA
Hypothetical protein; Transcription termination factor Rho.
  
   
 0.788
spoVT_1
Stage V sporulation protein T.
  
   
 0.776
spoIIIAE
Stage III sporulation protein AE precursor.
  
    0.775
gpr_1
Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
     0.773
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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