STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uppSIsoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (252 aa)    
Predicted Functional Partners:
IspA
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.972
cdsA
Phosphatidate cytidylyltransferase; Belongs to the CDS family.
  
  
 0.958
uppP
Undecaprenyl-diphosphatase.
     
 0.915
ispU
Ditrans,polycis-undecaprenyl-diphosphate synthase.
  
  
 
0.913
bcrC_1
Undecaprenyl-diphosphatase BcrC.
  
 
 0.911
bcrC_3-2
Undecaprenyl pyrophosphate phosphatase.
  
 
 0.911
bcrC_3
Undecaprenyl-diphosphatase BcrC.
  
 
 0.911
bcrC_1-2
Undecaprenyl pyrophosphate phosphatase.
  
 
 0.911
AQR98760.1
Heptaprenyl diphosphate synthase component I.
     
  0.900
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
  
  
 0.890
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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