STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCBGlycine betaine/carnitine/choline transport system permease protein OpuCB. (524 aa)    
Predicted Functional Partners:
opuCA
Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA.
 0.999
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.772
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
     
 0.772
mngR
mannosyl-D-glycerate transport/metabolism system repressor MngR.
 
     0.766
AQR98894.1
NADH oxidase.
     
 0.545
AQR98897.1
NADH oxidase.
     
 0.545
fldZ
2-enoate reductase FldZ.
     
 0.545
urdA
Urocanate reductase precursor.
  
  
 0.540
slyA_3
Transcriptional regulator SlyA.
 
  
 0.533
yecS
Inner membrane amino-acid ABC transporter permease protein YecS.
     
 0.523
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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