STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfrA2_1FMN reductase. (179 aa)    
Predicted Functional Partners:
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.625
mbtB_2
Phenyloxazoline synthase MbtB.
   
 
 0.598
lgrD_2
Linear gramicidin synthase subunit D.
   
 
 0.597
dhbE
2,3-dihydroxybenzoate-AMP ligase.
   
 
 0.576
ppsE
Plipastatin synthase subunit E.
   
 
 0.574
fadK_1
short-chain-fatty-acid--CoA ligase.
   
 
 0.574
fadK_2
short-chain-fatty-acid--CoA ligase.
   
 
 0.574
yhfT
Putative acyl--CoA ligase YhfT.
   
 
 0.574
AQS01851.1
ABC-2 family transporter protein.
  
  
 0.499
AQR99660.1
5'-nucleotidase.
     
 0.474
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.