STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cooS1Carbon monoxide dehydrogenase 1. (624 aa)    
Predicted Functional Partners:
padI
NADH-dependent phenylglyoxylate dehydrogenase subunit beta.
 
  
 0.949
cooS2
Carbon monoxide dehydrogenase 2.
  
  
 
0.914
hmp
Flavohemoprotein.
  
  
 0.767
padH
NADH-dependent phenylglyoxylate dehydrogenase subunit epsilon.
 
  
 0.682
cymR_2
HTH-type transcriptional regulator CymR.
     
 0.615
soj
Sporulation initiation inhibitor protein Soj.
      
 0.534
fprA_1
Nitric oxide reductase.
  
  
 0.527
nasD_2
Nitrite reductase.
 
  
 0.490
fhs
Formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family.
     
 0.463
asrC_2
Anaerobic sulfite reductase subunit C; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
   
 0.457
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.