STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR99691.1Hypothetical protein; Rhamnogalacturonase B, N-terminal. (551 aa)    
Predicted Functional Partners:
celS
Endoglucanase S precursor; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
     0.753
plc_1
1-phosphatidylinositol phosphodiesterase precursor.
  
     0.683
AQR99845.1
Tannase and feruloyl esterase.
  
     0.671
ganB
Arabinogalactan endo-1,4-beta-galactosidase precursor.
  
     0.648
cocE
Cocaine esterase.
  
     0.643
xynA
Endo-1,4-beta-xylanase A precursor; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.641
amyS
Alpha-amylase precursor.
  
     0.613
mii
3-methylitaconate isomerase.
  
     0.533
ybiA_2
Swarming motility protein YbiA.
  
     0.513
ybiA_1
Swarming motility protein YbiA.
  
     0.489
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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