STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CotJBCotJB protein. (83 aa)    
Predicted Functional Partners:
ydbD_1
Putative manganese catalase.
 
  
 0.976
AQR99765.1
Spore coat associated protein CotJA.
     
 0.859
ydbD_2
Putative manganese catalase.
 
  
 0.792
yunB
Sporulation protein YunB.
  
    0.662
yabG
Sporulation-specific protease YabG.
  
  
 0.611
AQS01977.1
Putative amidase domain protein.
  
  
 0.575
spoIIE
Stage II sporulation protein E.
  
     0.566
spoIIID
Stage III sporulation protein D.
 
    0.566
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.562
mnmG_1
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG.
  
    0.559
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.