STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsDD-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (131 aa)    
Predicted Functional Partners:
rbsK_1
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 
 0.996
rbsC_1
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.905
rbsB_2
D-ribose-binding periplasmic protein precursor.
 
  
 0.885
rbsC_2
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.869
rbsB_1
D-ribose-binding periplasmic protein precursor.
 
  
 0.839
mglB_7
D-galactose-binding periplasmic protein precursor.
 
  
 0.833
lsrC
Autoinducer 2 import system permease protein LsrC; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.815
rbsA_1
Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
  
 0.785
lsrD
Autoinducer 2 import system permease protein LsrD; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.783
rbsA_2
Ribose import ATP-binding protein RbsA.
 
  
 0.770
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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