Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ftsX_1Cell division protein FtsX. (197 aa)    
Predicted Functional Partners:
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
 
 0.988
ftsX_2
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
  
  
 
0.916
iap_2
Putative endopeptidase p60 precursor.
 
 
 0.766
iap_1
Putative endopeptidase p60 precursor.
 
 
 
 0.560
artJ_2
ABC transporter arginine-binding protein 1 precursor.
       0.516
mepH
Murein DD-endopeptidase MepH precursor.
   
 
 0.499
AQR99927.1
Dipeptidyl-peptidase 6.
   
 
 0.499
ykfC
gamma-D-glutamyl-L-lysine endopeptidase.
   
 
 0.499
AQS01978.1
Hypothetical protein.
   
 
 0.499
corA_3
Magnesium transport protein CorA.
 
    0.435
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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