STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arsDArsenical resistance operon trans-acting repressor ArsD. (128 aa)    
Predicted Functional Partners:
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.983
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.983
arsA
Arsenical pump-driving ATPase.
 
   
 0.950
sdpR_1
Transcriptional repressor SdpR.
 
   
 0.787
ArsB
Sodium bile acid symporter family protein.
     
 0.735
arsC1
Arsenate-mycothiol transferase ArsC1.
     
 0.650
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
  
 0.646
ldh1
L-lactate dehydrogenase 1; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
  
 0.646
ldhB
L-lactate dehydrogenase 2; Catalyzes the conversion of lactate to pyruvate.
  
  
 0.646
cdr_1
Coenzyme A disulfide reductase; Belongs to the sulfur carrier protein TusA family.
 
   
 0.575
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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