STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsxB_3Electron transport complex subunit RsxB. (94 aa)    
Predicted Functional Partners:
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.879
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.879
AQS00362.1
Iron hydrogenase 1.
   
 
 0.872
urdA
Urocanate reductase precursor.
  
 
 0.818
frdA
Fumarate reductase flavoprotein subunit.
  
 
 0.792
hydA
Periplasmic hydrogenase large subunit.
  
 
 0.723
AQR98592.1
Iron hydrogenase 1.
  
 
 0.687
hndD
NADP-reducing hydrogenase subunit HndC.
   
 
 0.677
yccM_1
Putative electron transport protein YccM.
  
 
 0.675
narB
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.668
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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