STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhbE2,3-dihydroxybenzoate-AMP ligase. (532 aa)    
Predicted Functional Partners:
mbtB_1
Phenyloxazoline synthase MbtB.
 
 
0.999
tycC
Tyrocidine synthase 3.
 
 
0.998
mbtB_2
Phenyloxazoline synthase MbtB.
  
0.998
srfAA
Surfactin synthase subunit 1.
 
 
0.998
lgrE
Linear gramicidin dehydrogenase LgrE.
 
  
 0.990
lgrD_2
Linear gramicidin synthase subunit D.
  
 0.981
AQR99887.1
Oxidoreductase family, NAD-binding Rossmann fold.
 
  
 0.975
grsB_2
Gramicidin S synthase 2.
  
0.967
mbtI
Isochorismate synthase/isochorismate lyase.
  
 0.959
ppsD
Plipastatin synthase subunit D.
 
  
 0.924
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.