Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
ykoD_1Putative HMP/thiamine import ATP-binding protein YkoD. (488 aa)    
Predicted Functional Partners:
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT.
 
 
 0.968
AQR99890.1
Hypothetical protein.
 
    0.897
cbiQ
Cobalt transport protein CbiQ.
 
 0.881
YgaD1
Putative multidrug export ATP-binding/permease protein.
   
0.844
soxS_1
Regulatory protein SoxS.
 
   
 0.824
MsbA1
Putative multidrug export ATP-binding/permease protein.
 
   
0.823
ecfT_4
Energy-coupling factor transporter transmembrane protein EcfT.
 
 
 0.808
gsiD
Glutathione transport system permease protein GsiD.
  
 
 0.779
oppC
Oligopeptide transport system permease protein OppC.
  
 
 0.779
appA
Oligopeptide-binding protein AppA precursor.
  
 0.775
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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