Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MsbA1Putative multidrug export ATP-binding/permease protein. (582 aa)    
Predicted Functional Partners:
AQR99890.1
Hypothetical protein.
 
     0.884
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT.
 
   
 0.882
phnC
Phosphate-import ATP-binding protein PhnC; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
     
0.831
ykoD_1
Putative HMP/thiamine import ATP-binding protein YkoD.
 
   
0.823
soxS_1
Regulatory protein SoxS.
 
  
 0.815
YgaD1
Putative multidrug export ATP-binding/permease protein.
 
    
0.810
lolD_5
Lipoprotein-releasing system ATP-binding protein LolD.
    
0.754
rob_2
Right origin-binding protein.
 
  
 0.664
yxlF_2
Putative ABC transporter ATP-binding protein YxlF.
  
 0.552
yxdL_3
ABC transporter ATP-binding protein YxdL.
    
0.477
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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