STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadA_12-dehydropantoate 2-reductase. (320 aa)    
Predicted Functional Partners:
AQR99900.1
Hypothetical protein.
 
    0.691
rob_2
Right origin-binding protein.
       0.686
lspA
Lipoprotein signal peptidase.
  
     0.454
ecfT_4
Energy-coupling factor transporter transmembrane protein EcfT.
 
     0.447
irtA
Iron import ATP-binding/permease protein IrtA.
       0.421
MsbA2
Putative multidrug export ATP-binding/permease protein.
       0.421
ykoD_2
Putative HMP/thiamine import ATP-binding protein YkoD.
 
     0.419
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
  
 0.412
AQS00482.1
Hypothetical protein.
  
     0.407
mntH_1
Divalent metal cation transporter MntH.
     
 0.400
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.