STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MsbA2Putative multidrug export ATP-binding/permease protein. (578 aa)    
Predicted Functional Partners:
irtA
Iron import ATP-binding/permease protein IrtA.
 
    
0.835
rob_2
Right origin-binding protein.
 
  
 0.745
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT.
 
   
 0.716
AQR99890.1
Hypothetical protein.
 
     0.700
ecfA1_2
Energy-coupling factor transporter ATP-binding protein EcfA1.
 
     
0.689
soxS_1
Regulatory protein SoxS.
 
  
 0.643
apxIB
Toxin RTX-I translocation ATP-binding protein.
 
 
  
0.628
lagD_1
lactococcin-G-processing and transport ATP-binding protein LagD.
 
 
  
0.619
lagD_2
lactococcin-G-processing and transport ATP-binding protein LagD.
 
 
  
0.619
lagD_4
lactococcin-G-processing and transport ATP-binding protein LagD.
 
 
  
0.617
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.