STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copA_1Copper resistance protein A precursor. (213 aa)    
Predicted Functional Partners:
copA_4
Copper-exporting P-type ATPase A.
 
 
 0.713
cadA_1
Cadmium, zinc and cobalt-transporting ATPase.
 
 
 0.703
copA_2
Copper-exporting P-type ATPase A.
  
 
 0.652
copA_3
Copper-exporting P-type ATPase A.
  
 
 0.635
YcgR
Putative two-component membrane permease complex subunit.
  
  
 0.601
barA_1
Signal transduction histidine-protein kinase BarA.
  
 
 0.584
hmp
Flavohemoprotein.
 
   
 0.529
puuB
Gamma-glutamylputrescine oxidoreductase.
   
  
 0.484
pacS
Putative copper-transporting ATPase PacS.
 
  
 0.468
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
    0.452
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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