STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
toxA_2Toxin A. (534 aa)    
Predicted Functional Partners:
toxB_3
Toxin B.
  
     0.763
lytA_4
Autolysin.
  
     0.752
lytA_8
Autolysin.
  
     0.750
toxB_1
Toxin B.
  
     0.741
lytA_18
Autolysin.
  
     0.741
lytA_7
Autolysin.
  
     0.729
AQS02325.1
Hypothetical protein.
 
     0.674
AQS02053.1
Hypothetical protein.
  
     0.664
lytA_5
Autolysin.
 
     0.652
AQS00934.1
HIRAN domain protein.
  
     0.648
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.