STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR99935.1Hypothetical protein; Resolvase, N terminal domain. (129 aa)    
Predicted Functional Partners:
XtmA
Terminase small subunit.
  
    0.630
agrB_2
Accessory protein regulator protein B.
  
     0.599
XkdS
Hypothetical protein.
  
  
 0.504
AQS00486.1
Phage tail sheath protein.
  
  
 0.489
AQS01155.1
Phage tail sheath protein.
  
  
 0.489
AQS01706.1
Phage tail sheath protein.
  
  
 0.476
AQR98689.1
LysM domain protein.
 
  
 0.455
AQS01146.1
Hypothetical protein.
  
    0.411
AQS01696.1
Hypothetical protein.
  
    0.409
XkdT1
Hypothetical protein.
  
    0.401
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.