STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR99939.1Hypothetical protein. (251 aa)    
Predicted Functional Partners:
YcgR
Putative two-component membrane permease complex subunit.
 
  
 0.958
AQR99937.1
CobW/HypB/UreG, nucleotide-binding domain.
 
     0.846
yjiA
Putative GTP-binding protein YjiA.
 
     0.614
AQR98393.1
Hypothetical protein.
  
     0.601
lspA
Lipoprotein signal peptidase.
  
     0.581
AQR99747.1
Hypothetical protein.
  
     0.510
AQS00866.1
Stage III sporulation protein SpoIIIAF.
  
     0.443
AQS02222.1
Peptidase family S41.
  
    0.425
AQS02241.1
Hypothetical protein.
  
     0.412
znuA_1
High-affinity zinc uptake system binding-protein ZnuA precursor.
 
     0.406
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.