STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR99989.1Small, acid-soluble spore protein beta. (68 aa)    
Predicted Functional Partners:
gpr_1
Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.719
tepA
Translocation-enhancing protein TepA.
  
     0.706
SpoIIIAA
Hypothetical protein; Transcription termination factor Rho.
  
   
 0.702
AQS00868.1
Stage III sporulation protein AC/AD protein family protein.
  
     0.695
spoIIIAE
Stage III sporulation protein AE precursor.
  
     0.692
spoVAD_1
Stage V sporulation protein AD.
  
  
 0.689
AQS00869.1
Stage III sporulation protein AC/AD protein family protein.
  
     0.688
YqfD
Putative stage IV sporulation protein YqfD.
 
     0.683
ylbJ
Sporulation integral membrane protein YlbJ.
  
     0.678
SpoVAC1
SpoVA protein.
  
  
 0.677
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.