STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msbA_1Putative ABC transporter ATP-binding protein. (589 aa)    
Predicted Functional Partners:
YgaD2
Putative multidrug export ATP-binding/permease protein.
 
    
0.827
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT.
 
   
 0.767
AQR99890.1
Hypothetical protein.
 
     0.753
lolD_5
Lipoprotein-releasing system ATP-binding protein LolD.
     
0.739
soxS_1
Regulatory protein SoxS.
 
  
 0.713
apxIB
Toxin RTX-I translocation ATP-binding protein.
 
 
  
0.653
lagD_2
lactococcin-G-processing and transport ATP-binding protein LagD.
 
 
  
0.640
lagD_1
lactococcin-G-processing and transport ATP-binding protein LagD.
 
 
  
0.637
lagD_4
lactococcin-G-processing and transport ATP-binding protein LagD.
 
 
  
0.636
rob_2
Right origin-binding protein.
 
  
 0.603
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.