STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xdhAXanthine dehydrogenase molybdenum-binding subunit. (758 aa)    
Predicted Functional Partners:
hcrC
4-hydroxybenzoyl-CoA reductase subunit gamma.
 
 0.999
AQS00030.1
Putative oxidoreductase.
 
 
 0.995
pucA
Putative xanthine dehydrogenase subunit A.
 
  
 0.891
pucB
Purine catabolism protein PucB.
 
   
 0.847
YqeC
Hypothetical protein.
 
   
 0.828
AQS00024.1
Hypothetical protein.
 
  
 0.782
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.690
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.690
cinA_1
Putative competence-damage inducible protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
   
 0.582
dapA_1
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
      
 0.525
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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