STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abfBExtracellular exo-alpha-L-arabinofuranosidase precursor. (175 aa)    
Predicted Functional Partners:
manA_2
Beta-mannanase/endoglucanase A precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 0.824
cel5A
Endoglucanase 5A; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.704
xynD_2
Arabinoxylan arabinofuranohydrolase precursor; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.678
xynD_1
Arabinoxylan arabinofuranohydrolase precursor.
 
   
 0.665
celS
Endoglucanase S precursor; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
 
   
 0.658
xynY
Endo-1,4-beta-xylanase Y precursor.
 
   
 0.617
xynA
Endo-1,4-beta-xylanase A precursor; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.615
lgrE
Linear gramicidin dehydrogenase LgrE.
  
     0.519
xynC
Glucuronoxylanase XynC precursor.
 
   
 0.495
ybiA_2
Swarming motility protein YbiA.
  
     0.495
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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