STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fprA1Flavo-diiron protein FprA1. (399 aa)    
Predicted Functional Partners:
hrb
High molecular weight rubredoxin.
 
  
 0.910
mmgC_1
acyl-CoA dehydrogenase.
 
  
 0.846
dfx
Desulfoferrodoxin.
 
  
 0.593
rbr
Rubrerythrin.
 
  
 0.588
padH
NADH-dependent phenylglyoxylate dehydrogenase subunit epsilon.
 
  
 0.579
rubR2
Rubredoxin-2.
 
  
 0.561
fprA_1
Nitric oxide reductase.
 
  
0.510
mgsR
Regulatory protein MgsR; Belongs to the ArsC family.
       0.469
spmA
Spore maturation protein A.
   
    0.452
AQR98764.1
Bacteriohemerythrin.
  
  
 0.432
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.