STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pehXExo-poly-alpha-D-galacturonosidase precursor; Belongs to the glycosyl hydrolase 28 family. (602 aa)    
Predicted Functional Partners:
uxaC
Uronate isomerase.
 
   
 0.761
uxaB
Altronate oxidoreductase; Belongs to the mannitol dehydrogenase family. UxaB subfamily.
 
   
 0.733
AQS01510.1
Hypothetical protein.
   
 
 0.711
chiA1
Chitinase A1 precursor; Belongs to the glycosyl hydrolase 18 family.
   
 
 0.704
uxaA
Altronate dehydratase.
 
   
 0.679
TMP
Phage-related minor tail protein.
  
   0.655
AQR98672.1
Multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1.
  
 
 0.643
AQR99944.1
Multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1.
  
 
 0.643
AQR99995.1
GDSL-like lipase/acylhydrolase.
  
 
 0.643
smc_3
Chromosome partition protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
   
 
 0.612
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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