STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nasD_1Nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (224 aa)    
Predicted Functional Partners:
padH
NADH-dependent phenylglyoxylate dehydrogenase subunit epsilon.
 
     0.929
mmgC_1
acyl-CoA dehydrogenase.
  
 
 0.788
nox
NADH oxidase.
    
 0.779
hrb
High molecular weight rubredoxin.
  
 
 0.755
nasF
uroporphyrinogen-III C-methyltransferase.
  
 0.754
rubR2
Rubredoxin-2.
  
 
 0.734
hmp
Flavohemoprotein.
 
  
 0.713
AQS00304.1
Bacterioferritin-associated ferredoxin.
  
     0.600
narB
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.546
sir_1
Sulfite reductase.
 
   
 0.483
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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