AQS00126.1 protein (Clostridium saccharobutylicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AQS00126.1

Putative multidrug export ATP-binding/permease protein. (593 aa)

Predicted Functional Partners:

AQS00127.1

0.983

lagD_1

0.650

lagD_2

0.646

apxIB

0.645

lagD_4

0.641

lagD_3

0.583

tycC

0.569

bmrR_2

0.569

sodA

0.569

srfAA

0.569

Your Current Organism:

Clostridium saccharobutylicum

NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQS00126.1	AQS00127.1	CSACC_19420	CSACC_19430	Putative multidrug export ATP-binding/permease protein.	Putative ABC transporter ATP-binding protein.	0.983
AQS00126.1	apxIB	CSACC_19420	CSACC_44170	Putative multidrug export ATP-binding/permease protein.	Toxin RTX-I translocation ATP-binding protein.	0.645
AQS00126.1	bmrR_2	CSACC_19420	CSACC_19410	Putative multidrug export ATP-binding/permease protein.	Multidrug-efflux transporter 1 regulator.	0.569
AQS00126.1	lagD_1	CSACC_19420	CSACC_01140	Putative multidrug export ATP-binding/permease protein.	lactococcin-G-processing and transport ATP-binding protein LagD.	0.650
AQS00126.1	lagD_2	CSACC_19420	CSACC_02790	Putative multidrug export ATP-binding/permease protein.	lactococcin-G-processing and transport ATP-binding protein LagD.	0.646
AQS00126.1	lagD_3	CSACC_19420	CSACC_09660	Putative multidrug export ATP-binding/permease protein.	lactococcin-G-processing and transport ATP-binding protein LagD.	0.583
AQS00126.1	lagD_4	CSACC_19420	CSACC_09710	Putative multidrug export ATP-binding/permease protein.	lactococcin-G-processing and transport ATP-binding protein LagD.	0.641
AQS00126.1	sodA	CSACC_19420	CSACC_22250	Putative multidrug export ATP-binding/permease protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.569
AQS00126.1	srfAA	CSACC_19420	CSACC_37480	Putative multidrug export ATP-binding/permease protein.	Surfactin synthase subunit 1.	0.569
AQS00126.1	tycC	CSACC_19420	CSACC_08330	Putative multidrug export ATP-binding/permease protein.	Tyrocidine synthase 3.	0.569
AQS00127.1	AQS00126.1	CSACC_19430	CSACC_19420	Putative ABC transporter ATP-binding protein.	Putative multidrug export ATP-binding/permease protein.	0.983
AQS00127.1	apxIB	CSACC_19430	CSACC_44170	Putative ABC transporter ATP-binding protein.	Toxin RTX-I translocation ATP-binding protein.	0.650
AQS00127.1	bmrR_2	CSACC_19430	CSACC_19410	Putative ABC transporter ATP-binding protein.	Multidrug-efflux transporter 1 regulator.	0.562
AQS00127.1	lagD_1	CSACC_19430	CSACC_01140	Putative ABC transporter ATP-binding protein.	lactococcin-G-processing and transport ATP-binding protein LagD.	0.652
AQS00127.1	lagD_2	CSACC_19430	CSACC_02790	Putative ABC transporter ATP-binding protein.	lactococcin-G-processing and transport ATP-binding protein LagD.	0.646
AQS00127.1	lagD_3	CSACC_19430	CSACC_09660	Putative ABC transporter ATP-binding protein.	lactococcin-G-processing and transport ATP-binding protein LagD.	0.583
AQS00127.1	lagD_4	CSACC_19430	CSACC_09710	Putative ABC transporter ATP-binding protein.	lactococcin-G-processing and transport ATP-binding protein LagD.	0.644
AQS00127.1	sodA	CSACC_19430	CSACC_22250	Putative ABC transporter ATP-binding protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.569
AQS00127.1	srfAA	CSACC_19430	CSACC_37480	Putative ABC transporter ATP-binding protein.	Surfactin synthase subunit 1.	0.569
AQS00127.1	tycC	CSACC_19430	CSACC_08330	Putative ABC transporter ATP-binding protein.	Tyrocidine synthase 3.	0.569