STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fliU_3Flagellar biosynthetic protein FliU. (386 aa)    
Predicted Functional Partners:
AQS02074.1
Flagellar basal body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.
  
   0.714
AQS01454.1
Hypothetical protein.
  
     0.560
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
   0.471
AQR98649.1
RNA polymerase factor sigma-70.
 
  
 0.461
AQR99310.1
Subtilase family protein.
  
     0.454
ThiS
Sulfur carrier protein ThiS.
  
     0.454
AQR98926.1
Subtilase family protein.
 
     0.451
AQR99917.1
Acetyltransferase (GNAT) family protein.
  
     0.451
AQR99311.1
Subtilase family protein.
  
     0.429
prtP
PIII-type proteinase precursor; Belongs to the peptidase S8 family.
  
     0.424
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.