STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjmBPutative symporter YjmB. (475 aa)    
Predicted Functional Partners:
uxaC
Uronate isomerase.
 
   
 0.832
AQS00131.1
HIT domain protein.
       0.638
dgoA
2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
   
 0.626
uxaB
Altronate oxidoreductase; Belongs to the mannitol dehydrogenase family. UxaB subfamily.
 
  
 0.605
csbC_1
Putative metabolite transport protein CsbC; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
  
   
 0.583
exuR
Putative HTH-type transcriptional repressor ExuR.
 
   
 0.578
kdgK
2-dehydro-3-deoxygluconokinase.
 
  
 0.507
uxaA
Altronate dehydratase.
 
   
 0.497
csbC_2
Putative metabolite transport protein CsbC; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
  
   
 0.449
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
  
 0.445
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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