Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQS00143.1KWG leptospira. (320 aa)    
Predicted Functional Partners:
thrB_1
Homoserine kinase.
     
 0.558
rpoE
RNA polymerase factor sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.523
AQS00145.1
Hypothetical protein.
   
 
 0.523
AQR98995.1
FHA domain protein.
   
 
 0.496
fhaB
FHA domain-containing protein FhaB.
   
 
 0.496
AQS00141.1
Bacterial regulatory protein, luxR family.
     
 0.487
cap8A_2
Capsular polysaccharide type 8 biosynthesis protein cap8A.
    
 
 0.471
todS_6
Sensor histidine kinase TodS.
 
 
 
 0.470
AQR98996.1
Hypothetical protein.
   
 
 0.469
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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