rpoE protein (Clostridium saccharobutylicum)

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second shell of interactors

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Score

rpoE

RNA polymerase factor sigma-70; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)

Predicted Functional Partners:

AQS00145.1

0.949

AQS00143.1

0.523

rpoB

0.515

rpoC

0.500

rpoA

0.491

rpoZ

0.476

AQS00199.1

0.469

AQS01304.1

0.437

cheR_1

0.417

cheR_2

0.417

Your Current Organism:

Clostridium saccharobutylicum

NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQS00143.1	AQS00145.1	CSACC_19590	CSACC_19610	KWG leptospira.	Hypothetical protein.	0.523
AQS00143.1	rpoE	CSACC_19590	CSACC_19600	KWG leptospira.	RNA polymerase factor sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.	0.523
AQS00145.1	AQS00143.1	CSACC_19610	CSACC_19590	Hypothetical protein.	KWG leptospira.	0.523
AQS00145.1	cheR_1	CSACC_19610	CSACC_20010	Hypothetical protein.	Chemotaxis protein methyltransferase.	0.417
AQS00145.1	cheR_2	CSACC_19610	CSACC_20380	Hypothetical protein.	Chemotaxis protein methyltransferase.	0.417
AQS00145.1	rpoA	CSACC_19610	CSACC_02300	Hypothetical protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.491
AQS00145.1	rpoB	CSACC_19610	CSACC_01940	Hypothetical protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.495
AQS00145.1	rpoC	CSACC_19610	CSACC_01950	Hypothetical protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.495
AQS00145.1	rpoE	CSACC_19610	CSACC_19600	Hypothetical protein.	RNA polymerase factor sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.	0.949
AQS00145.1	rpoZ	CSACC_19610	CSACC_13580	Hypothetical protein.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.476
AQS00199.1	cheR_1	CSACC_20150	CSACC_20010	Hypothetical protein.	Chemotaxis protein methyltransferase.	0.417
AQS00199.1	cheR_2	CSACC_20150	CSACC_20380	Hypothetical protein.	Chemotaxis protein methyltransferase.	0.417
AQS00199.1	rpoA	CSACC_20150	CSACC_02300	Hypothetical protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.491
AQS00199.1	rpoB	CSACC_20150	CSACC_01940	Hypothetical protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.495
AQS00199.1	rpoC	CSACC_20150	CSACC_01950	Hypothetical protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.495
AQS00199.1	rpoE	CSACC_20150	CSACC_19600	Hypothetical protein.	RNA polymerase factor sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.	0.469
AQS00199.1	rpoZ	CSACC_20150	CSACC_13580	Hypothetical protein.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.476
AQS01304.1	cheR_1	CSACC_31320	CSACC_20010	Hypothetical protein.	Chemotaxis protein methyltransferase.	0.417
AQS01304.1	cheR_2	CSACC_31320	CSACC_20380	Hypothetical protein.	Chemotaxis protein methyltransferase.	0.417
AQS01304.1	rpoA	CSACC_31320	CSACC_02300	Hypothetical protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.491