STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypdB_2Transcriptional regulatory protein YpdB. (240 aa)    
Predicted Functional Partners:
ypdA_2
Sensor histidine kinase YpdA.
 
 
 0.974
yehU_1
Putative sensor-like histidine kinase.
 
  
 0.812
ypdA_1
Sensor histidine kinase YpdA.
 
  
 0.737
yohK
Inner membrane protein YohK.
    
 0.625
yhjX
Putative MFS-type transporter YhjX.
 
   
 0.572
proA
Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
    
   0.570
citS
Sensor protein CitS.
  
  
 0.460
phoR_6
Alkaline phosphatase synthesis sensor protein PhoR.
     
 0.459
phoP_3
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
     
 0.449
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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