STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS00161.1Putative HTH-type transcriptional regulator. (158 aa)    
Predicted Functional Partners:
MarR2
MarR family protein.
  
     0.674
mepA_5
Multidrug export protein MepA.
 
  
 0.577
AQS01146.1
Hypothetical protein.
  
     0.543
XkdP
LysM domain/BON superfamily protein.
  
  
 0.510
pelL
Pectate lyase L precursor.
       0.480
AQS00194.1
Outer membrane-specific lipoprotein transporter subunit LolC.
 
     0.479
AQS00191.1
FtsX-like permease family protein.
 
     0.476
XkdS
Hypothetical protein.
  
     0.473
AQS01155.1
Phage tail sheath protein.
  
     0.443
AQS01696.1
Hypothetical protein.
  
     0.443
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.