STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS00173.1CRISPR associated protein Cas6. (231 aa)    
Predicted Functional Partners:
AQS00175.1
Hypothetical protein.
 
   
 0.944
AQS00176.1
Hypothetical protein.
 
   
 0.943
AQS00174.1
Hypothetical protein.
 
     0.942
cas2
CRISPR-associated endoribonuclease Cas2.
 
   
 0.861
cas1
CRISPR-associated endonuclease Cas1.
 
   
 0.821
Cas4
Hypothetical protein.
 
   
 0.821
cas3
CRISPR-associated nuclease/helicase Cas3.
 
   
 0.808
AQS00177.1
Helicase Cas3.
 
   
 0.807
Cas5
Hypothetical protein.
 
   
 0.795
AQS00674.1
Hypothetical protein.
 
   
 0.795
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.