STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS00194.1Outer membrane-specific lipoprotein transporter subunit LolC. (830 aa)    
Predicted Functional Partners:
lolD_4
Lipoprotein-releasing system ATP-binding protein LolD.
 
 
 0.975
lolD_3
Lipoprotein-releasing system ATP-binding protein LolD.
 
 
 0.896
phoR_7
Alkaline phosphatase synthesis sensor protein PhoR.
 
   
 0.857
macB_4
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.844
lolD_2
Lipoprotein-releasing system ATP-binding protein LolD.
 
 
 0.805
yycF_2
Transcriptional regulatory protein YycF.
 
   
 0.633
AQR98536.1
Peptidase family M50.
  
 
 0.620
emrK_1
Putative multidrug resistance protein EmrK; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.620
macA
Macrolide export protein MacA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.620
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD.
  
 
 0.607
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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